IGVFFI4888DKUC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1225ARBV(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP005_G5_P056_L008_I2

md5sum

6d7c8a37df34231068d62a6821c723c6

Content MD5sum

716a87a9082818c5bc069d5f7d8b1583

File Size

387 MB

Submitted File Name

Multiome_RNA_RP005_G5_L005_P056_S76_L008_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JHVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

72883352

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1655YUWG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples