IGVFFI4863TZPB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0247BVMI(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP006_G5_P055_L001_R1

md5sum

9f7c5b4d704615c8dce79d57b7753cf3

Content MD5sum

33636fd488c6c4242ef0e30d6493117a

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP006_G5_L005_P055_S9_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

57377814

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3715NVPJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples