IGVFFI4843GIXM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI4843GIXM/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4843GIXM",
10    "aliases": [
11        "ansuman-satpathy:igvf_mouse_bridge_769_atac_i1"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "content_md5sum": "52805de6de0ea220d7e2ee3eb5931287",
22    "content_type": "reads",
23    "controlled_access": false,
24    "creation_timestamp": "2025-01-15T23:45:21.650946+00:00",
25    "externally_hosted": false,
26    "file_format": "fastq",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS4021UKPE/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS4021UKPE",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0002762/",
37            "term_name": "single-nucleus ATAC-seq"
38        },
39        "data_use_limitation_summaries": [
40            "no certificate"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/tissues/IGVFSM9438GDDL/",
46                "@type": [
47                    "Tissue",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM9438GDDL",
53                "classifications": [
54                    "tissue"
55                ],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/NTR_0000646/",
59                        "status": "released",
60                        "term_name": "left cerebral cortex"
61                    }
62                ],
63                "status": "released",
64                "summary": "Mus musculus C57BL/6J (male, 10 weeks) left cerebral cortex tissue",
65                "taxa": "Mus musculus"
66            }
67        ],
68        "status": "released",
69        "summary": "single-nucleus ATAC-seq (10x multiome)"
70    },
71    "file_size": 4085015571,
72    "flowcell_id": "22VLCLLT3",
73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI4843GIXM/@@download/IGVFFI4843GIXM.fastq.gz",
75    "illumina_read_type": "I1",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/ansuman-satpathy/",
80        "title": "Ansuman Satpathy, Stanford"
81    },
82    "lane": 2,
83    "loci_list_for": [],
84    "maximum_read_length": 8,
85    "md5sum": "be64e4402dc55e2952a679ccf00ac483",
86    "mean_read_length": 8,
87    "minimum_read_length": 8,
88    "quality_metrics": [],
89    "read_count": 685553336,
90    "release_timestamp": "2025-03-07T01:19:05.681200+00:00",
91    "s3_uri": "s3://igvf-files/2025/01/15/c1c5d573-2acb-4e82-8bc5-8d2baa045e1e/IGVFFI4843GIXM.fastq.gz",
92    "schema_version": "15",
93    "seqspecs": [
94        "/configuration-files/IGVFFI6323NIKH/"
95    ],
96    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
97    "sequencing_platform": {
98        "@id": "/platform-terms/EFO_0022840/",
99        "status": "released",
100        "term_name": "Illumina NovaSeq X"
101    },
102    "sequencing_run": 1,
103    "status": "released",
104    "submitted_by": {
105        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
106        "title": "Christopher Mcginnis"
107    },
108    "submitted_file_name": "/oak/stanford/groups/satpathy/users/backup/cmcg/bridge_new/IGVF_ATAC_769_B6J_10M_21_S2_L002_I1_001.fastq.gz",
109    "summary": "I1 reads from sequencing run 1",
110    "upload_status": "validated",
111    "uuid": "c1c5d573-2acb-4e82-8bc5-8d2baa045e1e"
112}