IGVFFI4812DJTV

released

validated

File Set

IGVFDS6919SLGV(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_SSFA2-Auxin6hrs-FF2-BinF-PCR1-Rep1_S42

md5sum

0308ad4fabc1a8c543a0dd92d5b9c322

Content MD5sum

f74b01b8472f5ad861f9d5f6b6bf5834

File Size

15 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220308B014_CCND1_SSFA2_FAM3C/fastq_trim/SSFA2-Auxin6hrs-FF2-BinF-PCR1-Rep1_S42_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

AGGTTATC:TTGA

Average Read Length

Read Count

705128

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8591NYNI

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin F for 80-100% expression of SSFA2) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library