IGVFFI4780XBYA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1252CYKZ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP019_G1_P063_L007_I1

md5sum

4bd10b5a286cc0addce0628b51d67c92

Content MD5sum

bf3f8c4266eab9c1a7ac44af95546728

File Size

450 MB

Submitted File Name

Multiome_ATAC_RP019_G1_L001_P063_S35_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66189513

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4069BQTG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 72 years) middle temporal gyrus tissue associated with cerebral amyloid angiopathy; ... and 10 more samples