IGVFFI4775NXVC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2375PDRD(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP033_G7_P079_L006_R1

md5sum

1cd44fa3850db8b8a26b07bc031c0d4b

Content MD5sum

798fe5ae403bd18bdf787618337c9055

File Size

10 GB

Submitted File Name

Multiome_ATAC_RP033_G7_L007_P079_S31_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

146158031

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4328GBGB

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples