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IGVFFI4769HOXH

released
validated
File Set
IGVFDS5862OZVJ(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp12_rna_10x3_NGS6_i1
md5sum
1c2e9bd156cabf513a7d38beab17edda
Content MD5sum
c7f6e75471784ed71e56c0ed39ead484
File Size
1.0 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/240425_IGVF12_McGinnis/GEX/FASTQ/GEX3_S3_L006_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
225LWLLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
10
Read Count
181887433

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
179 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8223TUTE, IGVFFI4769HOXH, IGVFFI0777OJJX, IGVFFI0865BLKK
Ansuman Satpathy, Stanford
1.4 KB
validated