Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
SequenceFile
/
IGVFFI4762FVTH
IGVFFI4762FVTH
released
validated
Json view
File Set
IGVFDS5533XJRU
(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
jesse-engreitz:auxiliary_files_CRUDO_TAPseq-Auxin6hrs-Rep1_S4_R2
md5sum
971a5523b7c32e8b14c632bb3b8bfb4c
Content MD5sum
cd6940b6129443a7910aacdb740f08e2
File Size
414 MB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/221125_Cohesin_TAPseq_v1/221125_Cohesin_TAPseq_v1/outs/fastq_path/L363_S4_L004_R2_001.fastq.gz
Sequencing Details
Sequencing Platform
Illumina NextSeq 550
Sequencing Run
1
Lane
4
Illumina Read Type
R2
Average Read Length
90
Read Count
9476872
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM9983LVUX
InVitroSystem
HCT116
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2187YPQG
yaml
seqspec
seqspec of IGVFFI5484ZXJH, IGVFFI7147GVXA, IGVFFI4762FVTH
Jesse Engreitz, Stanford
1.2 KB
validated
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford