Home

IGVFFI4748IHHC

released
validated
File Set
IGVFDS8535JZRF(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 65
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_1979_R1
bradley-bernstein:SS-LS_65_R1
buenrostro-bernstein:SS-LS_1979_R1
buenrostro-bernstein:SS-LS_65_R1
md5sum
391f3b9b6331475a206d43715c2b8949
Content MD5sum
cba39205cfe3c3aed649014bf311f023
File Size
407 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-132_L1_SS-PKR-129_SS-V1-RIGHT-HALF_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
65
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
15285911

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
367 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4748IHHC, IGVFFI3275ZYCM
Jason Buenrostro, Broad
1.2 KB
validated