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INDEXED
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SequenceFile
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IGVFFI4743YZYA
IGVFFI4743YZYA
released
validated
Json view
File Set
IGVFDS6690HJKJ
(single-cell RNA sequencing assay (SHARE-seq))
Summary
I1 reads from sequencing run 2
File Format
fastq
Content Type
reads
Aliases
buenrostro-bernstein:surya-dss05_prim_12k_1_RNA.barcode.fastq.gz
md5sum
4ca4337932bff171e8a6973f13c5f414
Content MD5sum
0586333b9c342755a39f7aa39a46f684
File Size
1.3 GB
Submitted File Name
gs://sw-igvf-submission/surya-mouse-colitis/submit-fqs/barcode-file/dss05_prim_12k_1_RNA.barcode.fastq.gz
Checkfiles Version
v19
Attribution
Jason Buenrostro, Broad
(
HG011986
—
Jason Buenrostro
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
I1
Average Read Length
32
Read Count
58406419
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM0354RWOF
PrimaryCell
colon
Mus musculus C57BL/6J colon cell
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI9292BDUE
yaml
seqspec
seqspec of IGVFFI2146FIOR, IGVFFI4317LNJC, IGVFFI4743YZYA
Jason Buenrostro, Broad
1.2 KB
validated