IGVFFI4741GQIS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9083ZGEJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G7_P051_L005_I1

md5sum

ed0bd3a43cf2f9e7bf8ed1f70e7a7f00

Content MD5sum

b3b6942ec9a33d3a5f82c7ba268b7511

File Size

513 MB

Submitted File Name

Multiome_ATAC_RP002_G7_L007_P051_S35_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

71637515

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2339RJIS

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples