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IGVFFI4716LCQW

released
validated
File Set
IGVFDS9743PIFM(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp5_atac_10x1_NGS1_i1
md5sum
e9c84b15298b3987296bdd471ad6bc34
Content MD5sum
d6e6cc30167114d2a90a3accb3bfee29
File Size
1.9 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF5_McGinnis/ATAC/FASTQ/ATAC_1_S7_L005_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
222YV7LT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
273485548

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; Homo sapiens (female) H9 differentiated cell specimen induced to neuron for 6 days; ... and 6 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.4 GB
validation exempted

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4716LCQW, IGVFFI6618LQLL, IGVFFI5126YZZL, IGVFFI8766UVOC
Ansuman Satpathy, Stanford
1.4 KB
validated