IGVFFI4703TOTH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3200KMON(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X005_G5_P003_L004_R2

md5sum

36b737fc1cef8d2845c6afa9fe0f243b

Content MD5sum

115d20a950759257ce2060d594c3986e

File Size

3.7 GB

Submitted File Name

Multiome_ATAC_X005_G5_L005_P003_S23_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5TH7DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

209962517

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6709GBQC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples