IGVFFI4703CJIG

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9639FMLS(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP013_G5_P062_L005_I2

md5sum

e09244aecd3544d9ac721ccf609c9951

Content MD5sum

0b950c8bd43b1910b284ef453ca04d81

File Size

563 MB

Submitted File Name

Multiome_RNA_RP013_G5_L005_P062_S25_L005_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223H55LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

86526078

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8342TFWF

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples