IGVFFI4699UEFY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8899IUPN(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G5_P041_L002_R1

md5sum

ee2ab97bd0ef7cbd9de65c41faf4bd64

Content MD5sum

4a529419102b6b179202414c5d14faf8

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_X040_G5_L005_P041_S7_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74279617

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6104DPZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples