IGVFFI4696MZAN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8885GAJV(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP007_G5_P055_L001_R1

md5sum

53985ec53161a6ede616e3268f560f67

Content MD5sum

f5732242cf50c95af6a61eaef4b4b87b

File Size

2.0 GB

Submitted File Name

Multiome_ATAC_RP007_G5_L005_P055_S17_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67199401

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2276WIKG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 92 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 81 years) cerebellar cortex tissue; ... and 10 more samples