IGVFFI4677KEND

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5220YONJ(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X020_G7_P019_L003_R3

md5sum

f8a840daa3ef948b7e81b9fcbc9ff4f8

Content MD5sum

7fadcfb8ee352ac4cffa4960be7d9b79

File Size

7.1 GB

Submitted File Name

Multiome_ATAC_X020_G7_L007_P019_S39_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7NNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

220143071

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1610RAUV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples