IGVFFI4664NLFD

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0088WTOH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G5_P061_L004_R1

md5sum

4d0448b5e00f138b27c628e5b0cc5ecd

Content MD5sum

287b56a0fa7d42c715bd8bb18a23e615

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP013_G5_L005_P061_S5_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78020435

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8342TFWF

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples