IGVFFI4661ZBGP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7422MPAN(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X012_G8_P012_L004_R1

md5sum

98c0e1a2011367a84b336745b143954e

Content MD5sum

9d40d820369856ad6fad5c26a9351468

File Size

2.9 GB

Submitted File Name

Multiome_RNA_X012_G8_L008_P012_S18_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

136133565

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9165ZREW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples