IGVFFI4645DVDM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3033LUWO(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP030_G2_P077_L005_R1

md5sum

15f42bb5e003ba1faa6cf6a83afcc1c1

Content MD5sum

4821cf3552479a2b5b4b85ed37fa4462

File Size

1.8 GB

Submitted File Name

Multiome_ATAC_RP030_G2_L002_P077_S36_L005_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

59908728

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7720FVJI

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples