IGVFFI4636HAXA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2377SEOL(single-nucleus RNA sequencing assay (10x multiome))

Summary

I2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X042_G8_P044_L007_I2

md5sum

cbaf7542f99f9ee0991c7a94dfe4aaff

Content MD5sum

f3a702c576f6606e2614f28cf4e5ad92

File Size

400 MB

Submitted File Name

Multiome_RNA_X042_G8_L008_P044_S26_L007_I2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

67579654

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2293QQTO

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples