IGVFFI4633DDWR

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8592RZOJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G1_P053_L004_R1

md5sum

c303d9afdafcfded89a7378dc9ec1cd8

Content MD5sum

45420c1d1bb70d74d7920bf6f62242ab

File Size

1.7 GB

Submitted File Name

Multiome_ATAC_RP005_G1_L001_P053_S17_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

54965349

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7341RHCE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples