IGVFFI4625BMCS

released

validated

File Set

IGVFDS7928JRLY(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin6hrs-FF2-BinA-PCR3_S157

md5sum

dc985e9e3e90ad5dfcaa11a6fbb49207

Content MD5sum

94c5bb4ee5efb146866c6719e0932992

File Size

41 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin6hrs-FF2-BinA-PCR3_S157_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

ACTAAGAC:ATTG

Average Read Length

Read Count

1723893

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM8085CGHV

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin A for 0-10% expression of KITLG) treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library