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INDEXED
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SequenceFile
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IGVFFI4588KDSX
IGVFFI4588KDSX
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS4110RISR
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X056_G5_P074_L003_R1
md5sum
9078f19d08691451cdabb904d7e9a2a2
Content MD5sum
61338a56f9b1a01035517272afe4c72f
File Size
15 GB
Submitted File Name
Multiome_RNA_X056_G5_L005_P074_S33_L003_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19UBCA4LE
Lane
3
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
151
Read Count
178758100
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2277IYGW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 79 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 8 more samples