IGVFFI4576NGDX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3077XHHL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X044_G8_P045_L001_R3

md5sum

882f5e819a6a2c07ee9e9a7d6b9c42a8

Content MD5sum

c1ce4b150b0d9c15c1844063afc948f0

File Size

8.3 GB

Submitted File Name

Multiome_ATAC_X044_G8_L008_P045_S4_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VKTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

265941039

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3090RRWU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 85 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples