IGVFFI4573REJR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI4573REJR/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4573REJR",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "content_md5sum": "951eace9a69321c2b9f24aaf210bd28c",
19    "content_type": "reads",
20    "controlled_access": false,
21    "creation_timestamp": "2023-10-10T06:20:24.143279+00:00",
22    "externally_hosted": false,
23    "file_format": "fastq",
24    "file_set": {
25        "@id": "/measurement-sets/IGVFDS2599SXCL/",
26        "@type": [
27            "MeasurementSet",
28            "FileSet",
29            "Item"
30        ],
31        "accession": "IGVFDS2599SXCL",
32        "assay_term": {
33            "@id": "/assay-terms/OBI_0003109/",
34            "term_name": "single-nucleus RNA sequencing assay"
35        },
36        "file_set_type": "experimental data",
37        "samples": [
38            {
39                "@id": "/multiplexed-samples/IGVFSM7039DZUG/",
40                "@type": [
41                    "MultiplexedSample",
42                    "Sample",
43                    "Item"
44                ],
45                "accession": "IGVFSM7039DZUG",
46                "classifications": [
47                    "tissue",
48                    "multiplexed sample"
49                ],
50                "disease_terms": [],
51                "modifications": [],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000007/",
55                        "status": "released",
56                        "term_name": "pituitary gland"
57                    },
58                    {
59                        "@id": "/sample-terms/UBERON_0000473/",
60                        "status": "released",
61                        "term_name": "testis"
62                    },
63                    {
64                        "@id": "/sample-terms/UBERON_0000992/",
65                        "status": "released",
66                        "term_name": "ovary"
67                    },
68                    {
69                        "@id": "/sample-terms/UBERON_0000993/",
70                        "status": "released",
71                        "term_name": "oviduct"
72                    },
73                    {
74                        "@id": "/sample-terms/UBERON_0001301/",
75                        "status": "released",
76                        "term_name": "epididymis"
77                    },
78                    {
79                        "@id": "/sample-terms/UBERON_0001898/",
80                        "status": "released",
81                        "term_name": "hypothalamus"
82                    }
83                ],
84                "status": "released",
85                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
86                "taxa": "Mus musculus",
87                "treatments": []
88            }
89        ],
90        "status": "released",
91        "summary": "Parse SPLiT-seq"
92    },
93    "file_size": 15036848698,
94    "flowcell_id": "HWHTCDSX5",
95    "gene_list_for": [],
96    "href": "/sequence-files/IGVFFI4573REJR/@@download/IGVFFI4573REJR.fastq.gz",
97    "illumina_read_type": "R1",
98    "input_file_for": [
99        "/matrix-files/IGVFFI4490ZPOU/"
100    ],
101    "integrated_in": [],
102    "lab": {
103        "@id": "/labs/ali-mortazavi/",
104        "title": "Ali Mortazavi, UCI"
105    },
106    "lane": 2,
107    "loci_list_for": [],
108    "maximum_read_length": 140,
109    "md5sum": "de3ff3881c0e8dd7bd34fa834eac61cc",
110    "mean_read_length": 140,
111    "minimum_read_length": 140,
112    "quality_metrics": [],
113    "read_count": 217075389,
114    "read_names": [
115        "Read 1"
116    ],
117    "release_timestamp": "2025-04-19T00:14:59.470024+00:00",
118    "s3_uri": "s3://igvf-files/2023/10/10/adda4458-3b2f-42c1-95a4-9faabb35bd94/IGVFFI4573REJR.fastq.gz",
119    "schema_version": "15",
120    "seqspecs": [
121        "/configuration-files/IGVFFI6200WEFB/"
122    ],
123    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
124    "sequencing_platform": {
125        "@id": "/platform-terms/EFO_0008637/",
126        "status": "released",
127        "term_name": "Illumina NovaSeq 6000"
128    },
129    "sequencing_run": 6,
130    "status": "released",
131    "submitted_by": {
132        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
133        "title": "Diane Trout"
134    },
135    "submitted_file_name": "igvf_007/nova2/igvf_007_B04_D_nova_N2_L002_R1.fastq.gz",
136    "summary": "R1 reads from sequencing run 6",
137    "upload_status": "validated",
138    "uuid": "adda4458-3b2f-42c1-95a4-9faabb35bd94"
139}