IGVFFI4572WPOM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8662BJYJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_RP010_G8_P060_L007_R1

md5sum

c13d0d88a7628f5ed3ff9e5d7143ef91

Content MD5sum

f0d7f1ce023235914daf2158bfe9d728

File Size

1.6 GB

Submitted File Name

Multiome_RNA_RP010_G8_L008_P060_S43_L007_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

84632472

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6509YCTF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples