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IGVFFI4562ZCKO

released
validated
File Set
IGVFDS5192VPKQ(single-cell RNA sequencing assay (SHARE-seq))
Summary
R1 reads from sequencing run 247
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2009_R1
bradley-bernstein:SS-LS_247_R1
buenrostro-bernstein:SS-LS_2009_R1
buenrostro-bernstein:SS-LS_247_R1
md5sum
86a68d3954966763979091de2dfe1a0d
Content MD5sum
050bffdc19013637ece45915b9b50324
File Size
564 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-134_L2_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R1.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
247
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
50
Read Count
21211111

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
367 MB
validated
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI4562ZCKO, IGVFFI1478VZJX
Jason Buenrostro, Broad
1.2 KB
validated