IGVFFI4557PKXC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8592RZOJ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G1_P053_L001_R1

md5sum

d183bf193240cdb6da20174dfddb694e

Content MD5sum

2f78a4a1bfa39691f87b77df268cbdee

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP005_G1_L001_P053_S17_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

53955932

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7341RHCE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples