IGVFFI4555BVQA

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4496LMIG(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X009_G7_P007_L003_R3

md5sum

69b94809dba7763758fe22b35ff50f63

Content MD5sum

2539cc9039b736d0b8d0f06003339c30

File Size

12 GB

Submitted File Name

Multiome_ATAC_X009_G7_L007_P007_S27_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5THNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

225139642

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1068TNBF

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples