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IGVFFI4549DFQQ

released
validated
File Set
IGVFDS3259WGKQ(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp1_multi_10x1_NGS1_r1
md5sum
78039ff38bed86bf90cbc137b8cac4c1
Content MD5sum
c91593630a0c4ab0bd24dd9a8b94561e
File Size
654 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF1_McGinnis/MULTI/FASTQ/MULTI_1_S44_L007_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
2257H3LT3
Lane
7
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
32375612

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: HAP-1 cell line, male, Homo sapiens; HAP-1 cell line, male, Homo sapiens; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
475 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1003RFPB, IGVFFI4549DFQQ, IGVFFI5932THXZ, IGVFFI2536ELTM
Ansuman Satpathy, Stanford
1.3 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford