IGVFFI4513RTPY

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3379JUSL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G3_P051_L005_I1

md5sum

b2b563de3244fa69b4c0800ee4a3bb64

Content MD5sum

ea0c14e8798001d298a48544653ff966

File Size

567 MB

Submitted File Name

Multiome_ATAC_RP001_G3_L003_P051_S23_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

77422766

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8767PGTT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples