IGVFFI4506XCFK

released

validated

File Set

IGVFDS3139RYUI(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_MYC-Auxin0hrs-FF2-BinC-PCR1_Rep2_S82

md5sum

0b037a01e58c73097d38823a5e5cae2f

Content MD5sum

28ea571163ffa370be3fbbf86f7b292e

File Size

15 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220819B015_MYC/fastq_trim/MYC-Auxin0hrs-FF2-BinC-PCR1-Rep2_S82_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

GACAGTAA:TCTC

Average Read Length

Read Count

754529

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM7258NLNH

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin C for 35-45% expression of MYC) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library