IGVFFI4492NPKF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2033BVMC(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G2_P041_L002_I1

md5sum

6bb765defc90b1cb50553318a468fb2f

Content MD5sum

05a2a2e04ede93ad40dc164ad122b470

File Size

393 MB

Submitted File Name

Multiome_ATAC_X040_G2_L002_P041_S4_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

52389476

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7690RNGC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples