{
"@context": "/terms/",
"@id": "/sequence-files/IGVFFI4491NUDX/",
"@type": [
"SequenceFile",
"File",
"Item"
],
"accession": "IGVFFI4491NUDX",
"aliases": [
"jay-shendure:sc_rep_devCRE_mEBs_mBC_pdT_repA_10Xlane2_I1"
],
"assay_titles": [
"MPRA (scQer)"
],
"audit": {},
"award": {
"@id": "/awards/HG011966/",
"component": "functional characterization"
},
"content_md5sum": "61e6e1d17f20349faa28e61bcfadd54f",
"content_type": "reads",
"controlled_access": false,
"creation_timestamp": "2023-12-09T00:58:31.898044+00:00",
"externally_hosted": false,
"file_format": "fastq",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS8622RRUW/",
"accession": "IGVFDS8622RRUW",
"file_set_type": "quantification DNA barcode sequencing",
"samples": [
{
"@id": "/in-vitro-systems/IGVFSM6984COJC/",
"accession": "IGVFSM6984COJC",
"classifications": [
"differentiated cell specimen"
],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0004038/",
"status": "released",
"term_name": "mouse embryonic stem cell"
}
],
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"summary": "mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10Xlane2), male, Mus musculus WD44 transfected with a reporter library",
"targeted_sample_term": {
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"status": "released",
"term_name": "embryoid body"
},
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci"
},
"file_size": 314067268,
"flowcell_id": "HVYHWBGXL",
"gene_list_for": [],
"href": "/sequence-files/IGVFFI4491NUDX/@@download/IGVFFI4491NUDX.fastq.gz",
"illumina_read_type": "I1",
"input_file_for": [
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"/tabular-files/IGVFFI0929WRXO/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jay-shendure/",
"title": "Jay Shendure, UW"
},
"lane": 2,
"loci_list_for": [],
"maximum_read_length": 10,
"md5sum": "3c74d2063c0b4f6cb1993d89491f9d31",
"mean_read_length": 10,
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"read_count": 38477902,
"release_timestamp": "2024-06-27T00:41:45.430754+00:00",
"s3_uri": "s3://igvf-files/2023/12/09/c1252823-7e8a-49a5-a4b6-ea7828a9eed5/IGVFFI4491NUDX.fastq.gz",
"schema_version": "14",
"seqspecs": [
"/configuration-files/IGVFFI4228DINY/"
],
"sequencing_kit": "NextSeq 500/550 High-Output v2.5 Kit",
"sequencing_platform": {
"@id": "/platform-terms/EFO_0009173/",
"status": "released",
"term_name": "Illumina NextSeq 500"
},
"sequencing_run": 1,
"status": "released",
"submitted_by": {
"@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
"title": "Beth Martin"
},
"submitted_file_name": "/net/shendure/vol8/projects/JBL/GEO_sc_rep_fastqs_nobackup/geo_submission_20221108/sc_rep_devCRE_mEBs/sc_rep_mEB_series_mBC_pdT_repA_lane2_I1_001.fastq.gz",
"summary": "I1 reads from sequencing run 1",
"upload_status": "validated",
"uuid": "c1252823-7e8a-49a5-a4b6-ea7828a9eed5"
}