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SequenceFile
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IGVFFI4490PHJU
IGVFFI4490PHJU
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS2253HXOS
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X005_G1_P004_L001_R2
md5sum
e38d806dba4b217cf9a323f368315eda
Content MD5sum
b7125edeba722a7595f61077480a767d
File Size
15 GB
Submitted File Name
Multiome_RNA_X005_G1_L001_P004_S5_L001_R2_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
H5TLFDSX5
Lane
1
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
101
Read Count
263635458
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2834NWJT
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 87 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples