IGVFFI4483KSIK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2662CWSH(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G4_P013_L001_R1

md5sum

02a56bb0d6368805eb2ce7d4f921c49f

Content MD5sum

23b7d77feeb4d053f43df738dc897cee

File Size

4.8 GB

Submitted File Name

Multiome_ATAC_X015_G4_L004_P013_S10_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

147717534

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1366AGHP

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples