IGVFFI4471CLVZ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2763CAIE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X026_G3_P025_L001_R1

md5sum

dcae55758ec93e6255d1a00d78243b53

Content MD5sum

268b5ed12f1e1ad9bb537d9386af7629

File Size

4.0 GB

Submitted File Name

Multiome_ATAC_X026_G3_L003_P025_S4_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

126887952

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0949TONL

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples