IGVFFI4470AXQH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8859FDEI(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP015_G2_P061_L002_I1

md5sum

d635e31588c4d6ed6db906080887f335

Content MD5sum

24ed87ee8680a18431374d03e2943a30

File Size

520 MB

Submitted File Name

Multiome_ATAC_RP015_G2_L002_P061_S18_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68811328

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3324TBYQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 72 years) putamen tissue associated with cerebral amyloid angiopathy; ... and 10 more samples