IGVFFI4465PGDL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6132DAES(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G1_P075_L004_R1

md5sum

70a2a60b3ea07d17948165f1976d10e9

Content MD5sum

ffdbb9ea2ce3e1e6467b843c87d1e5a2

File Size

14 GB

Submitted File Name

Multiome_ATAC_RP028_G1_L001_P075_S33_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19NHCA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

185910006

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2298FJZK

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples