IGVFFI4453SDAI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3239VAXE(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X030_G6_P029_L003_R1

md5sum

db49c5e2824425b960c1f9d77c462b24

Content MD5sum

99378686b9d29fad3bdddf354f0bf806

File Size

8.7 GB

Submitted File Name

Multiome_ATAC_X030_G6_L006_P029_S34_L003_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7VHDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

100

Read Count

164112375

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3925MMVB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 60 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples