IGVFFI4408LTTU

{
    "@context": "/terms/",
    "@id": "/sequence-files/IGVFFI4408LTTU/",
    "@type": [
        "SequenceFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI4408LTTU",
    "aliases": [
        "chongyuan-luo:pgp_snm3c_C29_day3_L8_R1"
    ],
    "assay_titles": [
        "snM3C-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012079/",
        "component": "networks"
    },
    "content_md5sum": "6254a4b4f8525b9f62306fba91e4e76c",
    "content_type": "reads",
    "controlled_access": false,
    "creation_timestamp": "2024-11-15T20:13:29.920198+00:00",
    "externally_hosted": false,
    "file_format": "fastq",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS0964QENG/",
        "accession": "IGVFDS0964QENG",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/in-vitro-systems/IGVFSM3427AESQ/",
                "accession": "IGVFSM3427AESQ",
                "classifications": [
                    "reprogrammed cell specimen"
                ],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/CL_0000057/",
                        "status": "released",
                        "term_name": "fibroblast"
                    }
                ],
                "status": "released",
                "summary": "fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 3 days, Homo sapiens",
                "targeted_sample_term": {
                    "@id": "/sample-terms/EFO_0004905/",
                    "status": "released",
                    "term_name": "induced pluripotent stem cell"
                },
                "taxa": "Homo sapiens"
            }
        ],
        "status": "released",
        "summary": "snM3C-seq"
    },
    "file_size": 3101529650,
    "gene_list_for": [],
    "href": "/sequence-files/IGVFFI4408LTTU/@@download/IGVFFI4408LTTU.fastq.gz",
    "illumina_read_type": "R1",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/chongyuan-luo/",
        "title": "Chongyuan Luo, UCLA"
    },
    "lane": 8,
    "loci_list_for": [],
    "maximum_read_length": 151,
    "md5sum": "cb54d92e878448d5d083eb5720ffff12",
    "mean_read_length": 149.73,
    "minimum_read_length": 35,
    "quality_metrics": [],
    "read_count": 45507691,
    "read_names": [
        "Read 1"
    ],
    "release_timestamp": "2025-02-11T00:53:58.117807+00:00",
    "s3_uri": "s3://igvf-files/2024/11/15/3d1002b2-b35b-4334-8863-3111b0da5d0e/IGVFFI4408LTTU.fastq.gz",
    "schema_version": "15",
    "seqspecs": [],
    "sequencing_kit": "NovaSeq X Series 10B Reagent Kit",
    "sequencing_platform": {
        "@id": "/platform-terms/EFO_0022840/",
        "status": "released",
        "term_name": "Illumina NovaSeq X"
    },
    "sequencing_run": 1,
    "status": "released",
    "submitted_by": {
        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
        "title": "Terence Li"
    },
    "submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/snm3c/yzcl46/20230918-3C29D3-Pos1-A11_S7_L008_R1_001.fastq.gz",
    "submitter_comment": "Changed from Novaseq 6000 to Novaseq X on 20250224",
    "summary": "R1 reads from sequencing run 1",
    "upload_status": "validated",
    "uuid": "3d1002b2-b35b-4334-8863-3111b0da5d0e"
}