IGVFFI4406NYDE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI4406NYDE/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI4406NYDE",
10    "aliases": [
11        "chongyuan-luo:ys3g_snRNA_R2"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012079/",
19        "component": "networks"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "ee8103c4a4c89c03784ee188a362f472",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-02-05T18:58:56.238827+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS9374IPYD/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS9374IPYD",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0003109/",
38            "term_name": "single-nucleus RNA sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/multiplexed-samples/IGVFSM7968DCLN/",
44                "@type": [
45                    "MultiplexedSample",
46                    "Sample",
47                    "Item"
48                ],
49                "accession": "IGVFSM7968DCLN",
50                "classifications": [
51                    "reprogrammed cell specimen",
52                    "multiplexed sample"
53                ],
54                "disease_terms": [],
55                "modifications": [],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_0000057/",
59                        "status": "released",
60                        "term_name": "fibroblast"
61                    }
62                ],
63                "status": "released",
64                "summary": "multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 12 days; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 14 days; ... and 2 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "released",
70        "summary": "single-nucleus RNA sequencing assay (10x multiome)"
71    },
72    "file_size": 14919402560,
73    "gene_list_for": [],
74    "href": "/sequence-files/IGVFFI4406NYDE/@@download/IGVFFI4406NYDE.fastq.gz",
75    "illumina_read_type": "R2",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/chongyuan-luo/",
80        "title": "Chongyuan Luo, UCLA"
81    },
82    "loci_list_for": [],
83    "maximum_read_length": 101,
84    "md5sum": "bb957b092b20544bd3e7d7b7c6e80963",
85    "mean_read_length": 101,
86    "minimum_read_length": 101,
87    "quality_metrics": [],
88    "read_count": 281973641,
89    "read_names": [
90        "Read 2"
91    ],
92    "release_timestamp": "2025-03-27T21:33:23.412170+00:00",
93    "s3_uri": "s3://igvf-files/2025/02/05/66f14cee-c8e3-49b5-8c01-d7b5aec5de45/IGVFFI4406NYDE.fastq.gz",
94    "schema_version": "15",
95    "seqspecs": [
96        "/configuration-files/IGVFFI2070YRDB/"
97    ],
98    "sequencing_kit": "NovaSeq 6000 S4 Reagent Kit v1.5",
99    "sequencing_platform": {
100        "@id": "/platform-terms/EFO_0008637/",
101        "status": "released",
102        "term_name": "Illumina NovaSeq 6000"
103    },
104    "sequencing_run": 1,
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/ec46dfbd-fc11-419d-81e8-8ba82ffe6375/",
108        "title": "Terence Li"
109    },
110    "submitted_file_name": "/home/ec2-user/igvf/submit/fastq/year2/multiome/gex/IGVF2GEX-G_S7_L001_R2_001.fastq.gz",
111    "summary": "R2 reads from sequencing run 1",
112    "upload_status": "validated",
113    "uuid": "66f14cee-c8e3-49b5-8c01-d7b5aec5de45"
114}