IGVFFI4390EUYC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0831CAYJ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP011_G4_P059_L007_I1

md5sum

498b61d1a03365b6b447aa0a7307be5f

Content MD5sum

ecc091d1f27dc6438fa7106c8ee1877a

File Size

446 MB

Submitted File Name

Multiome_ATAC_RP011_G4_L004_P059_S76_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

225CCCLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

63371947

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9332LJBD

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 53 years) middle temporal gyrus tissue; Homo sapiens (male, 75 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 14 more samples