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INDEXED
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SequenceFile
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IGVFFI4390AABP
IGVFFI4390AABP
released
validated
Json view
File Set
IGVFDS3189UXGY
(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 2477
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2477_R2
buenrostro-bernstein:SS-LS_2477_R2
md5sum
986a717e1d73d2e41e1f88c1be1a8561
Content MD5sum
3c1295b55bb15f9fb1f5da8dbd9de8fe
File Size
987 MB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-49_L3_SS-PKR-5_SS-V1-1st-THIRD_R2.fastq.gz
Submitter Comment
This fastq has already been prefiltered with IGVFDS9814BQOF barcode onlist.
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
2477
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
21753576
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM7251TZFC
PrimaryCell
bone marrow
bone marrow cell (cellular sub pool: SS-PKR 5), male, Homo sapiens (26 years)
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4279WJVY
tsv
fragments
GRCh38 fragments
Jason Buenrostro, Broad
13 GB
validated
Attribution
Award
HG011986
Principal Investigator(s)
Bradley Bernstein
,
Jason Buenrostro
Contact P.I.
Jason Buenrostro
Lab
Jason Buenrostro, Broad