IGVFFI4381BXPL

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS2065OTBK(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X027_G4_P025_L001_I1

md5sum

fda143570393dd9f207d8d2741fae947

Content MD5sum

d511933b2708ede51cf189bd9ef4689c

File Size

810 MB

Submitted File Name

Multiome_ATAC_X027_G4_L004_P025_S13_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV737DSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

105228822

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7900CVVQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 71 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples