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IGVFFI4354LGMV

released
validated
File Set
IGVFDS8226YTNI(lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp4_multi_10x1_NGS1_i2
md5sum
2e68c2860fe4d4777f5c4ab790da368e
Content MD5sum
9eb3120363f4b79953b749fa579c656d
File Size
223 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF4_McGinnis/MULTI/FASTQ/MULTI_1_CMAS_IGVF4_R_S15_L005_I2_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I2
Average Read Length
10
Read Count
40436969

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) cell line treated with 50 ng/mL interleukin 4 for 1 day; Homo sapiens (male) GM25256 (WTC-11) cell line treated with 100 ng/mL macrophage colony-stimulating factor 1 for 7 days; ... and 13 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
1.2 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0643QFDR, IGVFFI7539KTAI, IGVFFI4354LGMV, IGVFFI8215HTLX
Ansuman Satpathy, Stanford
1.3 KB
validated