IGVFFI4353KQBK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8899IUPN(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G5_P041_L002_R2

md5sum

96b726589a5388763321afd9116c29c6

Content MD5sum

ef3ddef4bb5f947253b0aca14934f823

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_X040_G5_L005_P041_S7_L002_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

74279617

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6104DPZN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples