IGVFFI4352KIOJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1915XQPY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G2_P051_L008_R3

md5sum

ff93e23e3b3bce52ef5f9719e341c7ce

Content MD5sum

18c8f4cb5649288b62cdf1201ee71933

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP002_G2_L002_P051_S30_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

55084625

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM2903AXLJ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples