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INDEXED
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SequenceFile
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IGVFFI4343DBOR
IGVFFI4343DBOR
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS8995MLTF
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_RP004_G1_P054_L006_R1
md5sum
5025f93221c00e6fe5cb093f38779f2d
Content MD5sum
e0035271899e2aba30f70a4a0209de57
File Size
1.1 GB
Submitted File Name
Multiome_RNA_RP004_G1_L001_P054_S28_L006_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJGLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
54179977
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5141FLXJ
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; Homo sapiens (male, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; ... and 10 more samples